2018-02-12T11:42:35.000Z2025-05-11 14:31:54
description
transcriptional regulator (TetR family), control of qdoI-yxaH and lmrA-lmrB
transcriptional regulator ([SW|TetR family]), control of [[gene|qdoI]]-[[gene|yxaH]] and [[gene|lmrA]]-[[gene|lmrB]]
locus
BSU39990
BSU_39990
geneLength
573
576
ec
outlinks
bsu
BSU39990
BSU_39990
Gene
Coordinates
4,107,352 → 4,107,927
4,107,352 4,107,927
The protein
Paralogous protein(s)
[[protein|LmrA]]
[[this]]
The protein
Structure
[PDB|1SGM]
[PDB|1SGM] [pubmed|16475182]
Biological materials
Mutant
MGNA-B683 (yxaF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1682 NBRP B. subtilis, Japan]
BKE39990 (Δ[[gene|qdoR]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE39990 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTAAAACATTCCCTCCTA, downstream forward: _UP4_TAGCATTTTGTTATCCTTTC
BKK39990 (Δ[[gene|qdoR]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK39990 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTAAAACATTCCCTCCTA, downstream forward: _UP4_TAGCATTTTGTTATCCTTTC
MGNA-B683 (yxaF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1682 NBRP B. subtilis, Japan]
BKE39990 ([[gene|qdoR]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE39990 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTAAAACATTCCCTCCTA, downstream forward: _UP4_TAGCATTTTGTTATCCTTTC
BKK39990 ([[gene|qdoR]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK39990 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTAAAACATTCCCTCCTA, downstream forward: _UP4_TAGCATTTTGTTATCCTTTC
Labs working on this gene/protein
[SW|Yasutaro Fujita], University of Fukuyama, Japan
References
Original publications
The protein
[SW|Domains]
[SW|HTH tetR-type domain] (aa 5-65) (according to UniProt)
labs
[SW|Yasutaro Fujita], University of Fukuyama, Japan