SubtiBank SubtiBank
Version comparison:

2018-02-12T11:42:35.000Z2025-05-11 14:31:54

description

transcriptional regulator (TetR family), control of qdoI-yxaH and lmrA-lmrB

transcriptional regulator ([SW|TetR family]), control of [[gene|qdoI]]-[[gene|yxaH]] and [[gene|lmrA]]-[[gene|lmrB]]

locus

BSU39990

BSU_39990

geneLength

573

576

ec

outlinks

bsu

BSU39990

BSU_39990

Gene

Coordinates

4,107,352 → 4,107,927

4,107,352 4,107,927

The protein

Paralogous protein(s)

[[protein|LmrA]]

[[this]]

The protein

Structure

[PDB|1SGM]

[PDB|1SGM] [pubmed|16475182]

Biological materials

Mutant

MGNA-B683 (yxaF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1682 NBRP B. subtilis, Japan]

BKE39990 (Δ[[gene|qdoR]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE39990 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTAAAACATTCCCTCCTA, downstream forward: _UP4_TAGCATTTTGTTATCCTTTC

BKK39990 (Δ[[gene|qdoR]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK39990 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTAAAACATTCCCTCCTA, downstream forward: _UP4_TAGCATTTTGTTATCCTTTC

MGNA-B683 (yxaF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1682 NBRP B. subtilis, Japan]

BKE39990 ([[gene|qdoR]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE39990 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTAAAACATTCCCTCCTA, downstream forward: _UP4_TAGCATTTTGTTATCCTTTC

BKK39990 ([[gene|qdoR]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK39990 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTAAAACATTCCCTCCTA, downstream forward: _UP4_TAGCATTTTGTTATCCTTTC

Labs working on this gene/protein

[SW|Yasutaro Fujita], University of Fukuyama, Japan

References

Original publications

17483215, 10746760, 21737930

17483215, 10746760, 21737930, 16475182

The protein

[SW|Domains]

[SW|HTH tetR-type domain] (aa 5-65) (according to UniProt)

labs

[SW|Yasutaro Fujita], University of Fukuyama, Japan